PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_24582
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 295aa    MW: 32766.6 Da    PI: 5.2626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_24582genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-18106156155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+++AeIrdp+    r  r++lg+f taeeAak ++ a+ +l+g
  PEQU_24582 106 PRFRGVRRRP-WGKFAAEIRDPT----RrIRVWLGTFNTAEEAAKVYDSAAIQLRG 156
                 689*******.**********84....34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.53E-30106163No hitNo description
PfamPF008476.2E-12106156IPR001471AP2/ERF domain
PROSITE profilePS5103223.103107164IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-20107164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-29107164IPR001471AP2/ERF domain
SMARTSM003802.8E-35107170IPR001471AP2/ERF domain
PRINTSPR003671.1E-9108119IPR001471AP2/ERF domain
PRINTSPR003671.1E-9130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEEQRSDPIK RTVHIDVTSR PLNTTNLRSQ TVRIFCEDID ATDSSDDDCC FSRRRVKRYV  60
REIKFELQPS TATCSAKIKS GKSCAGQRKK KVAAALKKPQ PMPAIPRFRG VRRRPWGKFA  120
AEIRDPTRRI RVWLGTFNTA EEAAKVYDSA AIQLRGPDAT TNFSPPPPAT NHSISVGYES  180
SEDSHNTSSP TSVLRGFPSN TVAEAEAGLP EFGGDLNLFD EMPFYSENLD LGVYEQRVFN  240
NWSAEFGLFA GELQISDGGY EIGSSLHQDG DDFFEDITDL FPLDPLPAAV TSGIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-18108163359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925783.19e-80PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLM0TRY88e-68M0TRY8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P19850_0012e-67(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-34cytokinin response factor 4